1M33 Structural Genomics, Unknown Function date Jun 26, 2002
title Crystal Structure Of Bioh At 1.7 A
authors R.Sanishvili, A.Savchenko, T.Skarina, A.Edwards, A.Joachimiak, A. Midwest Center For Structural Genomics (Mcsg)
compound source
Molecule: Bioh Protein
Chain: A
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Bioh
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 43
R_factor 0.145 R_Free 0.188
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.210 75.210 49.256 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand 3OH, EDO, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIntegrating structure, bioinformatics and enzymology to discover function: BioH, a new carboxylesterase from E. coli., Sanishvili R, Yakunin AF, Laskowski RA, Skarina T, Evdokimova E, Doherty-Kirby A, Lajoie GA, Thornton JM, Arrowsmith CH, Savchenko A, Joachimiak A, Edwards AM, J Biol Chem 2003 May 5;. PMID:12732651
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (1m33.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 1M33
  • CSU: Contacts of Structural Units for 1M33
  • Likely Quarternary Molecular Structure file(s) for 1M33
  • Structure Factors (230 Kb)
  • Retrieve 1M33 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1M33 from S2C, [Save to disk]
  • Re-refined 1m33 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1M33 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1M33
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1M33, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1m33a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1m33] [1m33_A]
  • SWISS-PROT database: [P13001]
  • Domain organization of [BIOH_ECOLI] by SWISSPFAM
    • Other resources with information on 1M33
  • Community annotation for 1M33 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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