1M3V Metal Binding Protein date Jun 30, 2002
title Flin4: Fusion Of The Lim Binding Domain Of Ldb1 And The N-Te Domain Of Lmo4
authors J.E.Deane, J.P.Mackay, A.H.Y.Kwan, E.Y.Sum, J.E.Visvader, J.M.Mat
compound source
Molecule: Fusion Of The Lim Interacting Domain Of Ldb1 And Terminal Lim Domain Of Lmo4;
Chain: A
Synonym: Flin4
Engineered: Yes
Mutation: Yes
Other_details: Fusion Protein Comprises Lim Domain Transcri Factor Lmo4 (Residues 16-86) Via Glycine-Rich Linker (Ggsgg Lim Domain-Binding Protein 1 (Residues 300-339).
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-2t
methodSolution NMR
ligand ZN enzyme
related structures by homologous chain: 1J2O
Primary referenceStructural basis for the recognition of ldb1 by the N-terminal LIM domains of LMO2 and LMO4., Deane JE, Mackay JP, Kwan AH, Sum EY, Visvader JE, Matthews JM, EMBO J 2003 May 1;22(9):2224-33. PMID:12727888
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (569 Kb) [Save to disk]
  • Biological Unit Coordinates (1m3v.pdb1.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 1M3V
  • CSU: Contacts of Structural Units for 1M3V
  • Original NMR restraints for 1M3V from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1M3V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1M3V from S2C, [Save to disk]
    • View 1M3V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1M3V
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1M3V, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1m3va1, region A:1-32 [Jmol] [rasmolscript] [script source]
        - Domain d1m3va2, region A:33-71 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1m3v_A] [1m3v]
  • SWISS-PROT database: [P70662] [P61969]
  • Domain organization of [LDB1_MOUSE] [LMO4_MOUSE] by SWISSPFAM
  • Domain found in 1M3V: [LIM ] by SMART
    • Other resources with information on 1M3V
  • Community annotation for 1M3V at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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