1M67	Oxidoreductase	date	Jul 12, 2002
title	Crystal Structure Of Leishmania Mexicana Gpdh Complexed With 2-Bromo-6-Hydroxy-Purine
authors	J.Choe, S.Suresh, G.Wisedchaisri, K.J.Kennedy, M.H.Gelb, W.G.J.Ho
compound		source
Molecule: Glycerol-3-Phosphate Dehydrogenase Chain: A Synonym: Gpdh, L-Glycerol-3-Phosphate Dehydrogenase Ec: 1.1.1.8 Engineered: Yes		Organism_scientific: Leishmania Mexicana Organism_taxid: 5665 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet3a
symmetry	Space Group: P 41 21 2	R_factor 0.244 R_Free 0.286
crystal cell	length a length b length c angle alpha angle beta angle gamma 70.503 70.503 211.738 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	BOA, PLM	enzyme	Oxidoreductase E.C.1.1.1.8 BRENDA
related structures	by homologous chain: 1EVZ, 1N1G
Gene Ontology	Chain Function Process Component A
Primary reference	Anomalous differences of light elements in determining precise binding modes of ligands to glycerol-3-phosphate dehydrogenase., Choe J, Suresh S, Wisedchaisri G, Kennedy KJ, Gelb MH, Hol WG, Chem Biol 2002 Nov;9(11):1189-97. PMID:12445769

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk] Biological Unit Coordinates (1m67.pdb1.gz) 107 Kb LPC: Ligand-Protein Contacts for 1M67 CSU: Contacts of Structural Units for 1M67 Likely Quarternary Molecular Structure file(s) for 1M67 Structure Factors (156 Kb) Retrieve 1M67 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1M67 from S2C, [Save to disk] Re-refined 1m67 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 1M67

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1M67, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1m67a1, region A:198-357 [Jmol] [rasmolscript] [script source]     - Domain d1m67a2, region A:9-197 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1m67_A] [1m67] SWISS-PROT database: [P90551] Domain organization of [GPDA_LEIME] by SWISSPFAM

Other resources with information on 1M67

Community annotation for 1M67 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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