1M6I Oxidoreductase date Jul 16, 2002
title Crystal Structure Of Apoptosis Inducing Factor (Aif)
authors H.Ye, C.Cande, N.C.Stephanou, S.Jiang, S.Gurbuxani, N.Larochette, C.Garrido, G.Kroemer, H.Wu
compound source
Molecule: Programmed Cell Death Protein 8
Chain: A
Fragment: Residues 121-613
Synonym: Apoptosis-Inducing Factor
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 1 21 1
R_factor 0.225 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.900 90.500 60.500 90.00 94.60 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand FAD enzyme
related structures by homologous chain: 1GV4
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDNA binding is required for the apoptogenic action of apoptosis inducing factor., Ye H, Cande C, Stephanou NC, Jiang S, Gurbuxani S, Larochette N, Daugas E, Garrido C, Kroemer G, Wu H, Nat Struct Biol 2002 Sep;9(9):680-4. PMID:12198487
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (1m6i.pdb1.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 1M6I
  • CSU: Contacts of Structural Units for 1M6I
  • Likely Quarternary Molecular Structure file(s) for 1M6I
  • Structure Factors (494 Kb)
  • Retrieve 1M6I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1M6I from S2C, [Save to disk]
  • Re-refined 1m6i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1M6I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1M6I
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1M6I, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1m6ia1, region A:128-263,A:401-477 [Jmol] [rasmolscript] [script source]
        - Domain d1m6ia2, region A:264-400 [Jmol] [rasmolscript] [script source]
        - Domain d1m6ia3, region A:478-608 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1m6i_A] [1m6i]
  • SWISS-PROT database: [O95831]
  • Domain organization of [AIFM1_HUMAN] by SWISSPFAM
  • Domain found in 1M6I: [AIF_C ] by SMART
  • Other resources with information on 1M6I
  • Community annotation for 1M6I at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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