1M7Q Transferase date Jul 22, 2002
title Crystal Structure Of P38 Map Kinase In Complex With A Dihydroquinazolinone Inhibitor
authors J.E.Stelmach, L.Liu, S.B.Patel, J.V.Pivnichny, G.Scapin, S.Singh, C.E.C.A.Hop, Z.Wang, P.M.Cameron, E.A.Nichols, S.J.O'Keefe, E.A. D.M.Schmatz, C.D.Schwartz, C.M.Thompson, D.M.Zaller, J.B.Dohert
compound source
Molecule: Mitogen-Activated Protein Kinase 14
Chain: A
Synonym: Mitogen-Activated Protein Kinase P38, Map Kinase P Cytokine Suppressive Anti-Inflammatory Drug Binding Protein Binding Protein, Csbp, Max-Interacting Protein 2, Map Kinas
Ec: 2.7.1.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet
symmetry Space Group: P 21 21 21
R_factor 0.217 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.516 87.163 124.939 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand DQO, SO4 BindingDB enzyme Transferase E.C.2.7.1 BRENDA
related structures by homologous chain: 1A9U, 1BMK
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDesign and synthesis of potent, orally bioavailable dihydroquinazolinone inhibitors of p38 MAP kinase., Stelmach JE, Liu L, Patel SB, Pivnichny JV, Scapin G, Singh S, Hop CE, Wang Z, Strauss JR, Cameron PM, Nichols EA, O'Keefe SJ, O'Neill EA, Schmatz DM, Schwartz CD, Thompson CM, Zaller DM, Doherty JB, Bioorg Med Chem Lett 2003 Jan 20;13(2):277-80. PMID:12482439
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (1m7q.pdb1.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 1M7Q
  • CSU: Contacts of Structural Units for 1M7Q
  • Likely Quarternary Molecular Structure file(s) for 1M7Q
  • Structure Factors (141 Kb)
  • Retrieve 1M7Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1M7Q from S2C, [Save to disk]
  • Re-refined 1m7q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1M7Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1M7Q
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1M7Q, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1m7qa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1m7q] [1m7q_A]
  • SWISS-PROT database: [Q16539]
  • Domain organization of [MK14_HUMAN] by SWISSPFAM
  • Domain found in 1M7Q: [S_TKc ] by SMART
  • Other resources with information on 1M7Q
  • Community annotation for 1M7Q at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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