1M8L Viral Protein date Jul 25, 2002
title Nmr Structure Of The Hiv-1 Regulatory Protein Vpr
authors N.Morellet, S.Bouaziz, C.Lenoir, B.P.Roques
compound source
Molecule: Vpr Protein
Chain: A
Engineered: Yes
 Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized. The Is Naturally Found In Human Immunodeficiency Virus Type 1 (
methodSolution NMR
related structures by homologous chain: 1BDE
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNMR structure of the HIV-1 regulatory protein VPR., Morellet N, Bouaziz S, Petitjean P, Roques BP, J Mol Biol 2003 Mar 14;327(1):215-27. PMID:12614620
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (1m8l.pdb1.gz) 26 Kb
  • CSU: Contacts of Structural Units for 1M8L
  • Original NMR restraints for 1M8L from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1M8L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1M8L from S2C, [Save to disk]
    • View 1M8L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1M8L
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1M8L, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1m8la_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1m8l_A] [1m8l]
  • SWISS-PROT database: [Q73369]
  • Domain organization of [VPR_HV1B9] by SWISSPFAM
    • Other resources with information on 1M8L
  • Community annotation for 1M8L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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