1M9L Contractile Protein date Jul 29, 2002
title Relaxation-Based Refined Structure Of Chlamydomonas Outer Ar Light Chain 1
authors H.W.Wu, M.W.Maciejewski, A.Marintchev, S.E.Benashski, G.P.Mullen
compound source
Molecule: Outer Arm Dynein Light Chain 1
Chain: A
Engineered: Yes
 Organism_scientific: Chlamydomonas Reinhardtii
Organism_taxid: 3055
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: 1132d(-)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet16b
methodSolution NMR
related structures by homologous chain: 1DS9
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRelaxation-based structure refinement and backbone molecular dynamics of the dynein motor domain-associated light chain., Wu H, Blackledge M, Maciejewski MW, Mullen GP, King SM, Biochemistry 2003 Jan 14;42(1):57-71. PMID:12515539
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (791 Kb) [Save to disk]
  • Biological Unit Coordinates (1m9l.pdb1.gz) 52 Kb
  • CSU: Contacts of Structural Units for 1M9L
  • Original NMR restraints for 1M9L from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1M9L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1M9L from S2C, [Save to disk]
    • View 1M9L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1M9L
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1M9L, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1m9la_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1m9l_A] [1m9l]
  • SWISS-PROT database: [Q9XHH2]
  • Domain organization of [DNAL1_CHLRE] by SWISSPFAM
  • Domains found in 1M9L: [LRR] [LRRcap ] by SMART
    • Other resources with information on 1M9L
  • Community annotation for 1M9L at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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