1M9N Transferase, Hydrolase date Jul 29, 2002
title Crystal Structure Of The Homodimeric Bifunctional Transformy Cyclohydrolase Enzyme Avian Atic In Complex With Aicar And 1.93 Angstroms.
authors D.W.Wolan, S.E.Greasly, G.P.Beardsley, I.A.Wilson
compound source
Molecule: Aicar Transformylase-Imp Cyclohydrolase
Chain: A, B
Synonym: Bifunctional Purine Biosynthesis Protein Purh [Inc Phosphoribosylaminoimidazolecarboxamide Formyltransferase ( Transformylase) And Imp Cyclohydrolase (Inosinicase, Imp Sy Atic)];
Ec: 2.1.2.3, 3.5.4.10
Engineered: Yes
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Gene: Purh
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 1 21 1
R_factor 0.206 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.480 107.880 103.860 90.00 91.20 90.00
method X-Ray Diffractionresolution 1.93 Å
ligand AMZ, K, XMP enzyme Transferase E.C.2.1.2.3 BRENDA
related structures by homologous chain: 1OZ0, 1PKX
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural insights into the avian AICAR transformylase mechanism., Wolan DW, Greasley SE, Beardsley GP, Wilson IA, Biochemistry 2002 Dec 31;41(52):15505-13. PMID:12501179
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (195 Kb) [Save to disk]
  • Biological Unit Coordinates (1m9n.pdb1.gz) 187 Kb
  • LPC: Ligand-Protein Contacts for 1M9N
  • CSU: Contacts of Structural Units for 1M9N
  • Likely Quarternary Molecular Structure file(s) for 1M9N
  • Structure Factors (1467 Kb)
  • Retrieve 1M9N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1M9N from S2C, [Save to disk]
  • Re-refined 1m9n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1M9N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1M9N
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1M9N, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1m9na2, region A:201-593 [Jmol] [rasmolscript] [script source]
        - Domain d1m9na1, region A:4-200 [Jmol] [rasmolscript] [script source]
        - Domain d1m9nb2, region B:201-593 [Jmol] [rasmolscript] [script source]
        - Domain d1m9nb1, region B:4-200 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1m9n] [1m9n_B] [1m9n_A]
  • SWISS-PROT database: [P31335]
  • Domain organization of [PUR9_CHICK] by SWISSPFAM
  • Domains found in 1M9N: [AICARFT_IMPCHas] [MGS ] by SMART
  • Other resources with information on 1M9N
  • Community annotation for 1M9N at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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