OCA Atlas for 1MC7

1MC7

Signaling Protein

date

Aug 05, 2002

title

Solution Structure Of Mdvl1 Pdz Domain

authors

H.C.Wong, A.Bourdelas, Y.Shao, D.Wu, D.L.Shi, J.Zheng

compound

source

Molecule: Segment Polarity Protein Dishevelled Homolog Dvl-
Chain: A
Fragment: Pdz Domain
Synonym: Dishevelled-1, Dsh Homolog 1
Engineered: Yes
Mutation: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl-21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28

method

Solution NMR

Gene
Ontology

Chain	Function	Process	Component
A

Primary reference

Direct binding of the PDZ domain of Dishevelled to a conserved internal sequence in the C-terminal region of Frizzled., Wong HC, Bourdelas A, Krauss A, Lee HJ, Shao Y, Wu D, Mlodzik M, Shi DL, Zheng J, Mol Cell 2003 Nov;12(5):1251-60. PMID:14636582

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (445 Kb) [Save to disk]

Biological Unit Coordinates (1mc7.pdb1.gz) 22 Kb

CSU: Contacts of Structural Units for 1MC7

Retrieve 1MC7 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1MC7 from S2C, [Save to disk]

View 1MC7 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1MC7

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 1MC7, from MSDmotif at EBI

Classification of representative domains in scop (Structural Classification of Proteins)
- Domain d1mc7a_, region A [Jmol] [rasmolscript] [script source]

Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH

Summaries and structural analyses of PDB data files from PDBSum

Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1mc7] [1mc7_A]

SWISS-PROT database: [P51141]

Domain organization of [DVL1_MOUSE] by SWISSPFAM

Domain found in 1MC7: [PDZ ] by SMART

Other resources with information on 1MC7

Community annotation for 1MC7 at PDBWiki (http://pdbwiki.org)

NMR Ensemble (OLDERADO: core, domain and representative structure database)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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