1MF1 Ligase date Aug 09, 2002
title Structure Of The Recombinant Mouse-Muscle Adenylosuccinate S Complexed With Amp
authors C.V.Iancu, T.Borza, H.J.Fromm, R.B.Honzatko
compound source
Molecule: Adenylosuccinate Synthetase
Chain: A
Synonym: Adss, Ampsase
Ec: 6.3.4.4
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Adss1
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28b
symmetry Space Group: P 43 21 2
R_factor 0.219 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.240 70.240 199.140 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand ACT, AMP enzyme Ligase E.C.6.3.4.4 BRENDA
related structures by homologous chain: 1MF0
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceFeedback inhibition and product complexes of recombinant mouse muscle adenylosuccinate synthetase., Iancu CV, Borza T, Fromm HJ, Honzatko RB, J Biol Chem 2002 Oct 25;277(43):40536-43. PMID:12186864
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (1mf1.pdb1.gz) 135 Kb
  • LPC: Ligand-Protein Contacts for 1MF1
  • CSU: Contacts of Structural Units for 1MF1
  • Likely Quarternary Molecular Structure file(s) for 1MF1
  • Structure Factors (151 Kb)
  • Retrieve 1MF1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MF1 from S2C, [Save to disk]
  • Re-refined 1mf1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1MF1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MF1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1MF1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mf1a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mf1_A] [1mf1]
  • SWISS-PROT database: [P28650]
  • Domain organization of [PURA1_MOUSE] by SWISSPFAM
  • Domain found in 1MF1: [Adenylsucc_synt ] by SMART
  • Other resources with information on 1MF1
  • Community annotation for 1MF1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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