1MF5 GCATGCT Quadruplex date
authors Thorpe, J.H., Teixeira, S.C.M., Gale, B.C., Cardin, C.J.
compound source
symmetry
R_factor
R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.10
ligand NCO enzyme
Primary referenceCrystal structure of the complementary quadruplex formed by d(GCATGCT) at atomic resolution., Thorpe JH, Teixeira SC, Gale BC, Cardin CJ, Nucleic Acids Res 2003 Feb 1;31(3):844-9. PMID:12560479
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (17 Kb) [Save to disk]
  • Biological Unit Coordinates (1mf5.pdb1.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 1MF5
  • CSU: Contacts of Structural Units for 1MF5
  • Likely Quarternary Molecular Structure file(s) for 1MF5
  • Structure Factors (190 Kb)
  • Retrieve 1MF5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MF5 from S2C, [Save to disk]
  • Re-refined 1mf5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1MF5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MF5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1MF5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mf5] [1mf5_B] [1mf5_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1MF5
  • Community annotation for 1MF5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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