1MFM	Oxidoreductase	date	Apr 16, 1999
title	Monomeric Human Sod Mutant F50eg51ee133q At Atomic Resolut
authors	M.Ferraroni, W.Rypniewski, K.S.Wilson, P.L.Orioli, M.S.Viezzoli, I.Bertini, S.Mangani
compound		source
Molecule: Protein (Copper,Zinc Superoxide Dismutase) Chain: A Synonym: Q133m2sod Ec: 1.15.1.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cellular_location: Cytoplasm Gene: Sod1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Topp 1 (Stratagene) Expression_system_cellular_location: Periplasm Expression_system_vector_type: Pbr322 Expression_system_gene: Hsod
symmetry	Space Group: P 21 21 21	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 34.990 48.110 81.080 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.02 Å
ligand	CD, CL, CU, ZN	enzyme	Oxidoreductase E.C.1.15.1.1 BRENDA
note	1MFM is a representative structure
related structures	by homologous chain: 1Q0E
Gene Ontology	Chain Function Process Component A superoxide dismutase activit... protein binding anterograde axonal transport... retrograde axonal transport
Primary reference	The crystal structure of the monomeric human SOD mutant F50E/G51E/E133Q at atomic resolution. The enzyme mechanism revisited., Ferraroni M, Rypniewski W, Wilson KS, Viezzoli MS, Banci L, Bertini I, Mangani S, J Mol Biol 1999 May 7;288(3):413-26. PMID:10329151

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk] Biological Unit Coordinates (1mfm.pdb1.gz) 30 Kb LPC: Ligand-Protein Contacts for 1MFM CSU: Contacts of Structural Units for 1MFM Likely Quarternary Molecular Structure file(s) for 1MFM Structure Factors (566 Kb) Retrieve 1MFM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1MFM from S2C, [Save to disk] Re-refined 1mfm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1MFM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1MFM

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1MFM from the CEP Server. Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1MFM, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1mfma_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1mfm_A] [1mfm] SWISS-PROT database: [P00441] Domain organization of [SODC_HUMAN] by SWISSPFAM

Other resources with information on 1MFM

Community annotation for 1MFM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Domain movements in 1MFM from the Database of Macromolecular Movements. Images from IMB Jena Image Library of Biological Macromolecules.

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