1MJV Hormone Growth Factor date Aug 28, 2002
title Disulfide Deficient Mutant Of Vascular Endothelial Growth Fa (C51a And C60a)
authors Y.A.Muller, C.Heiring, R.Misselwitz, K.Welfle, H.Welfle
compound source
Molecule: Vascular Endothelial Growth Factor A
Chain: A, B
Fragment: Residues 40-134, Sequence Database
Synonym: Vegf-A, Vascular Permeability Factor, Vpf
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B843(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-3d
symmetry Space Group: P 1 21 1
R_factor 0.196 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
29.280 77.200 55.110 90.00 98.92 90.00
method X-Ray Diffractionresolution 2.10 Å
related structures by homologous chain: 1BJ1, 2VPF
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe cystine knot promotes folding and not thermodynamic stability in vascular endothelial growth factor., Muller YA, Heiring C, Misselwitz R, Welfle K, Welfle H, J Biol Chem 2002 Nov 8;277(45):43410-6. Epub 2002 Aug 30. PMID:12207021
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (1mjv.pdb1.gz) 35 Kb
  • CSU: Contacts of Structural Units for 1MJV
  • Likely Quarternary Molecular Structure file(s) for 1MJV
  • Structure Factors (112 Kb)
  • Retrieve 1MJV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MJV from S2C, [Save to disk]
  • Re-refined 1mjv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1MJV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MJV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1MJV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mjva_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1mjvb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mjv_B] [1mjv_A] [1mjv]
  • SWISS-PROT database: [P15692]
  • Domain organization of [VEGFA_HUMAN] by SWISSPFAM
  • Domain found in 1MJV: [PDGF ] by SMART
  • Other resources with information on 1MJV
  • Community annotation for 1MJV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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