1MN3 Protein Transport date Sep 04, 2002
title Cue Domain Of Yeast Vps9p
authors G.Prag, S.Misra, E.Jones, R.Ghirlando, B.A.Davies, B.F.Horazdovsk J.H.Hurley
compound source
Molecule: Vacuolar Protein Sorting-Associated Protein Vps9
Chain: A
Fragment: Cue Domain (Residues 398-451)
Engineered: Yes
Mutation: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Vps9
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-Rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phis-Parallel2
symmetry Space Group: P 65 2 2
R_factor 0.244 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.487 70.487 61.384 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand MSE enzyme
related structures by homologous chain: 1P3Q
Primary referenceMechanism of ubiquitin recognition by the CUE domain of Vps9p., Prag G, Misra S, Jones EA, Ghirlando R, Davies BA, Horazdovsky BF, Hurley JH, Cell 2003 May 30;113(5):609-20. PMID:12787502
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (14 Kb) [Save to disk]
  • Biological Unit Coordinates (1mn3.pdb1.gz) 10 Kb
  • Biological Unit Coordinates (1mn3.pdb2.gz) 19 Kb
  • LPC: Ligand-Protein Contacts for 1MN3
  • CSU: Contacts of Structural Units for 1MN3
  • Likely Quarternary Molecular Structure file(s) for 1MN3
  • Structure Factors (58 Kb)
  • Retrieve 1MN3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MN3 from S2C, [Save to disk]
  • Re-refined 1mn3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1MN3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MN3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1MN3, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mn3a_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mn3] [1mn3_A]
  • SWISS-PROT database: [P54787]
  • Domain organization of [VPS9_YEAST] by SWISSPFAM
  • Domain found in 1MN3: [CUE ] by SMART
  • Other resources with information on 1MN3
  • Community annotation for 1MN3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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