1MNS Racemase date Jul 06, 1993
title On The Role Of Lysine 166 In The Mechanism Of Mandelate Race Pseudomonas Putida: Mechanistic And Crystallographic Eviden Stereospecific Alkylation By (R)-Alpha-Phenylglycidate
authors D.J.Neidhart, J.A.Landro, J.W.Kozarich
compound source
Molecule: Mandelate Racemase
Chain: A
Ec: 5.1.2.2
Engineered: Yes
Organism_scientific: Pseudomonas Putida
Organism_taxid: 303
symmetry Space Group: I 4 2 2
R_factor 0.153 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
125.000 125.000 105.600 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand APG, MG enzyme Isomerase E.C.5.1.2.2 BRENDA
related structures by homologous chain: 1MDR, 2MNR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe role of lysine 166 in the mechanism of mandelate racemase from Pseudomonas putida: mechanistic and crystallographic evidence for stereospecific alkylation by (R)-alpha-phenylglycidate., Landro JA, Gerlt JA, Kozarich JW, Koo CW, Shah VJ, Kenyon GL, Neidhart DJ, Fujita S, Petsko GA, Biochemistry 1994 Jan 25;33(3):635-43. PMID:8292591
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (1mns.pdb1.gz) 456 Kb
  • LPC: Ligand-Protein Contacts for 1MNS
  • CSU: Contacts of Structural Units for 1MNS
  • Likely Quarternary Molecular Structure file(s) for 1MNS
  • Retrieve 1MNS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MNS from S2C, [Save to disk]
  • View 1MNS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MNS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1MNS, from MSDmotif at EBI
  • Genome occurence of 1MNS's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mns_1, region 133-359 [Jmol] [rasmolscript] [script source]
        - Domain d1mns_2, region 3-132 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mns_A] [1mns]
  • SWISS-PROT database: [P11444]
  • Domain organization of [MANR_PSEPU] by SWISSPFAM
  • Domain found in 1MNS: [MR_MLE ] by SMART
  • Other resources with information on 1MNS
  • Community annotation for 1MNS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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