1MQZ Antibiotic date Sep 17, 2002
title Nmr Solution Structure Of Type-B Lantibiotics Mersacidin Bou Lipid II In Dpc Micelles
authors S.T.Hsu, E.Breukink, G.Bierbaum, H.G.Sahl, B.De Kruijff, R.Kapt N.A.Van Nuland, A.M.Bonvin
compound source
Molecule: Lantibiotic Mersacidin
Chain: A
Synonym: Type-B Lantibiotics Mersacidin
Organism_scientific: Bacillus Sp. Hil-Y8554728
Organism_taxid: 69002
Strain: Hil Y-85, 54728
methodSolution NMR
ligand DBB, DHA, TEE enzyme
Primary referenceNMR study of mersacidin and lipid II interaction in dodecylphosphocholine micelles. Conformational changes are a key to antimicrobial activity., Hsu ST, Breukink E, Bierbaum G, Sahl HG, de Kruijff B, Kaptein R, van Nuland NA, Bonvin AM, J Biol Chem 2003 Apr 11;278(15):13110-7. Epub 2003 Jan 31. PMID:12562773
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (1mqz.pdb1.gz) 5 Kb
  • LPC: Ligand-Protein Contacts for 1MQZ
  • CSU: Contacts of Structural Units for 1MQZ
  • Original NMR restraints for 1MQZ from PDB
  • Retrieve 1MQZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MQZ from S2C, [Save to disk]
  • View 1MQZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MQZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1MQZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mqza_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mqz_A] [1mqz]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1MQZ
  • Community annotation for 1MQZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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