1MSE Dna Binding Protein Dna date Jan 24, 1995
title Solution Structure Of A Specific Dna Complex Of The Myb Dna- Domain With Cooperative Recognition Helices
authors K.Ogata, S.Morikawa, H.Nakamura, A.Sekikawa, T.Inoue, H.Kanai, A.S S.Ishii, Y.Nishimura
compound source
Molecule: Dna (5'-D(Cpcptpapapcptpgpapcpapcpap 3');
Chain: A
Engineered: Yes
 Synthetic: Yes
Other_details: Chemically Synthesized

Molecule: Dna (5'-D(Aptpgptpgptpgptpcpapgptptp 3');
Chain: B
Engineered: Yes
Synthetic: Yes
Other_details: Chemically Synthesized

Molecule: C-Myb Dna-Binding Domain
Chain: C
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Par2156nco1
Expression_system_plasmid: Par2156nco1r23
methodSolution NMR
related structures by homologous chain: 1MBH, 1MBK, 1MSF
Primary referenceSolution structure of a specific DNA complex of the Myb DNA-binding domain with cooperative recognition helices., Ogata K, Morikawa S, Nakamura H, Sekikawa A, Inoue T, Kanai H, Sarai A, Ishii S, Nishimura Y, Cell 1994 Nov 18;79(4):639-48. PMID:7954830
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (1mse.pdb1.gz) 42 Kb
  • CSU: Contacts of Structural Units for 1MSE
  • Retrieve 1MSE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MSE from S2C, [Save to disk]
    • View 1MSE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1MSE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1MSE, from MSDmotif at EBI
  • Genome occurence of 1MSE's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1msec2, region C:144-193 [Jmol] [rasmolscript] [script source]
        - Domain d1msec1, region C:89-143 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mse_A] [1mse_C] [1mse] [1mse_B]
  • SWISS-PROT database: [P06876]
  • Domain organization of [MYB_MOUSE] by SWISSPFAM
  • Domain found in 1MSE: [SANT ] by SMART
    • Other resources with information on 1MSE
  • Community annotation for 1MSE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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