1MU6	Blood Clotting,Hydrolase Inhibitor	date	Sep 23, 2002
title	Crystal Structure Of Thrombin In Complex With L-378,622
authors	C.S.Burgey, K.A.Robinson, T.A.Lyle, P.E.Sanderson, S.D.Lewis, B.J J.A.Krueger, R.Singh, C.Miller-Stein, R.B.White, B.Wong, E.A.Lyl P.D.Williams, C.A.Coburn, B.D.Dorsey, J.C.Barrow, M.T.Stranieri M.A.Holahan, G.R.Sitko, J.J.Cook, D.R.Mcmasters, C.M.Mcdonough, W.M.Sanders, A.A.Wallace, F.C.Clayton, D.Bohn, Y.M.Leonard, T.J. Jr., J.J.Lynch Jr., Y.Yan, Z.Chen, L.Kuo, S.J.Gardell, J.A.Shafer J.P.J.Vacca
compound		source
Molecule: Thrombin Chain: A Fragment: Light Chain Synonym: Coagulation Factor II Ec: 3.4.21.5		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Tissue: Plasma
Molecule: Thrombin Chain: B Fragment: Heavy Chain Synonym: Coagulation Factor II Ec: 3.4.21.5		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Tissue: Plasma
Molecule: Hirudin Iib Chain: C Engineered: Yes		Synthetic: Yes Organism_scientific: Hirudo Medicinalis Organism_taxid: 6421 Other_details: This Peptide Was Chemically Synthesized. It Naturally Found In Hirudo Medicinalis (Medicinal Leech).
symmetry	Space Group: C 1 2 1	R_factor 0.206 R_Free 0.235
crystal cell	length a length b length c angle alpha angle beta angle gamma 71.220 72.210 73.300 90.00 101.10 90.00
method	X-Ray Diffraction	resolution	1.99 Å
ligand	CDA, TYS BindingDB	enzyme	Hydrolase E.C.3.4.21.5 BRENDA
related structures	by homologous chain: 1C1V, 1UMA
Gene Ontology	Chain Function Process Component A B
Primary reference	Metabolism-directed optimization of 3-aminopyrazinone acetamide thrombin inhibitors. Development of an orally bioavailable series containing P1 and P3 pyridines., Burgey CS, Robinson KA, Lyle TA, Sanderson PE, Lewis SD, Lucas BJ, Krueger JA, Singh R, Miller-Stein C, White RB, Wong B, Lyle EA, Williams PD, Coburn CA, Dorsey BD, Barrow JC, Stranieri MT, Holahan MA, Sitko GR, Cook JJ, McMasters DR, McDonough CM, Sanders WM, Wallace AA, Clayton FC, Bohn D, Leonard YM, Detwiler TJ Jr, Lynch JJ Jr, Yan Y, Chen Z, Kuo L, Gardell SJ, Shafer JA, Vacca JP, J Med Chem 2003 Feb 13;46(4):461-73. PMID:12570369

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk] Biological Unit Coordinates (1mu6.pdb1.gz) 50 Kb LPC: Ligand-Protein Contacts for 1MU6 CSU: Contacts of Structural Units for 1MU6 Likely Quarternary Molecular Structure file(s) for 1MU6 Retrieve 1MU6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1MU6 from S2C, [Save to disk]

View 1MU6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1MU6

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1MU6, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1mu6.1, region A:,B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1mu6_C] [1mu6] [1mu6_B] [1mu6_A] SWISS-PROT database: [P28506] [P00734] Domain organization of [HIR2B_HIRME] [THRB_HUMAN] by SWISSPFAM Domain found in 1MU6: [Tryp_SPc ] by SMART

Other resources with information on 1MU6

Community annotation for 1MU6 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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