1MVL Lyase date Sep 26, 2002
title Ppc Decarboxylase Mutant C175s
authors S.Steinbacher, P.Hernandez-Acosta, B.Bieseler, M.Blaesse, R.Hube F.A.Culianez-Macia, T.Kupke
compound source
Molecule: Ppc Decarboxylase Athal3a
Chain: A
Synonym: Halotolerance Protein Hal3a
Ec: 4.1.1.36
Engineered: Yes
Mutation: Yes
Organism_scientific: Arabidopsis Thaliana
Organism_common: Thale Cress
Organism_taxid: 3702
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 63
R_factor 0.169 R_Free 0.203
crystal
cell
length a length b length c angle alpha angle beta angle gamma
111.790 111.790 32.996 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand FMN enzyme Lyase E.C.4.1.1.36 BRENDA
note 1MVL is a representative structure
related structures by homologous chain: 1E20
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the plant PPC decarboxylase AtHAL3a complexed with an ene-thiol reaction intermediate., Steinbacher S, Hernandez-Acosta P, Bieseler B, Blaesse M, Huber R, Culianez-Macia FA, Kupke T, J Mol Biol 2003 Mar 14;327(1):193-202. PMID:12614618
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (1mvl.pdb1.gz) 94 Kb
  • Biological Unit Coordinates (1mvl.pdb2.gz) 33 Kb
  • LPC: Ligand-Protein Contacts for 1MVL
  • CSU: Contacts of Structural Units for 1MVL
  • Likely Quarternary Molecular Structure file(s) for 1MVL
  • Structure Factors (129 Kb)
  • Retrieve 1MVL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MVL from S2C, [Save to disk]
  • Re-refined 1mvl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1MVL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MVL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1MVL, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mvla_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mvl_A] [1mvl]
  • SWISS-PROT database: [Q9SWE5]
  • Domain organization of [HAL3A_ARATH] by SWISSPFAM
  • Other resources with information on 1MVL
  • Community annotation for 1MVL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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