1MXB Transferase date Jan 10, 1996
title S-Adenosylmethionine Synthetase With Adp
authors F.Takusagawa, S.Kamitori, G.D.Markham
compound source
Molecule: S-Adenosylmethionine Synthetase
Chain: A
Synonym: Mat, Atp\:L-Methionine S-Adenosyltransferase
Ec: 2.5.1.6
Organism_scientific: Escherichia Coli
Organism_taxid: 562
symmetry Space Group: P 62 2 2
R_factor 0.194 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
128.900 128.900 139.800 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
ligand ADP, K, MG, PO4 enzyme Transferase E.C.2.5.1.6 BRENDA
related structures by homologous chain: 1MXA, 1MXC
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure and function of S-adenosylmethionine synthetase: crystal structures of S-adenosylmethionine synthetase with ADP, BrADP, and PPi at 28 angstroms resolution., Takusagawa F, Kamitori S, Markham GD, Biochemistry 1996 Feb 27;35(8):2586-96. PMID:8611562
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (1mxb.pdb1.gz) 137 Kb
  • Biological Unit Coordinates (1mxb.pdb2.gz) 274 Kb
  • LPC: Ligand-Protein Contacts for 1MXB
  • CSU: Contacts of Structural Units for 1MXB
  • Likely Quarternary Molecular Structure file(s) for 1MXB
  • Retrieve 1MXB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MXB from S2C, [Save to disk]
  • View 1MXB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MXB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1MXB, from MSDmotif at EBI
  • Genome occurence of 1MXB's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mxb_1, region 1-102 [Jmol] [rasmolscript] [script source]
        - Domain d1mxb_2, region 108-231 [Jmol] [rasmolscript] [script source]
        - Domain d1mxb_3, region 232-383 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mxb_A] [1mxb]
  • SWISS-PROT database: [P0A817]
  • Domain organization of [METK_ECOLI] by SWISSPFAM
  • Other resources with information on 1MXB
  • Community annotation for 1MXB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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