1MY5 Transcription date Oct 03, 2002
title Nf-Kappab P65 Subunit Dimerization Domain Homodimer
authors T.Huxford, D.Mishler, C.B.Phelps, D.B.Huang, L.L.Sengchanthalan R.Reeves, C.A.Hughes, E.A.Komives, G.Ghosh
compound source
Molecule: Nf-Kappab P65 (Rela) Subunit
Chain: A, B
Fragment: Residues 191-304 (Dimerization Domain)
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Rela
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: C 2 2 21
R_factor 0.200 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.348 74.732 109.147 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
related structures by homologous chain: 1BFT, 1MY7
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceSolvent exposed non-contacting amino acids play a critical role in NF-kappaB/IkappaBalpha complex formation., Huxford T, Mishler D, Phelps CB, Huang DB, Sengchanthalangsy LL, Reeves R, Hughes CA, Komives EA, Ghosh G, J Mol Biol 2002 Dec 6;324(4):587-97. PMID:12460563
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (1my5.pdb1.gz) 37 Kb
  • CSU: Contacts of Structural Units for 1MY5
  • Likely Quarternary Molecular Structure file(s) for 1MY5
  • Retrieve 1MY5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MY5 from S2C, [Save to disk]
  • View 1MY5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MY5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1MY5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1my5a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1my5b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1my5_B] [1my5] [1my5_A]
  • SWISS-PROT database: [Q04207]
  • Domain organization of [TF65_MOUSE] by SWISSPFAM
  • Domain found in 1MY5: [IPT ] by SMART
  • Other resources with information on 1MY5
  • Community annotation for 1MY5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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