1MZN	Transcription	date	Oct 09, 2002
title	Crystal Structure At 1.9 Angstroems Resolution Of The Homodi Human Rxr Alpha Ligand Binding Domain Bound To The Syntheti Compound Bms 649 And A Coactivator Peptide
authors	P.F.Egea, A.Mitschler, D.Moras
compound		source
Molecule: Rxr Retinoid X Receptor Chain: A, C, E, G Fragment: Ligand Binding Domain(Residues 223-462) Synonym: Retinoic Acid Receptor Rxr-Alpha Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-15b
Molecule: Nuclear Receptor Coactivator 2 Chain: B, D, F, H Fragment: Nr Box Synonym: Grip1 Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630 Other_details: Chemical Synthesis, This Is The Synthetic Pe Fragment From Grip-1 Coactivator
symmetry	Space Group: P 1	R_factor 0.195 R_Free 0.232
crystal cell	length a length b length c angle alpha angle beta angle gamma 47.119 64.694 94.784 109.97 92.87 89.99
method	X-Ray Diffraction	resolution	1.90 Å
ligand	BM6 BindingDB	enzyme
related structures	by homologous chain: 1MV9
Gene Ontology	Chain Function Process Component A, C, G, E
Primary reference	Molecular recognition of agonist ligands by RXRs., Egea PF, Mitschler A, Moras D, Mol Endocrinol 2002 May;16(5):987-97. PMID:11981034

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (167 Kb) [Save to disk] Biological Unit Coordinates (1mzn.pdb1.gz) 81 Kb Biological Unit Coordinates (1mzn.pdb2.gz) 83 Kb LPC: Ligand-Protein Contacts for 1MZN CSU: Contacts of Structural Units for 1MZN Likely Quarternary Molecular Structure file(s) for 1MZN Retrieve 1MZN in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1MZN from S2C, [Save to disk]

View 1MZN in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1MZN

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1MZN, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1mzna_, region A [Jmol] [rasmolscript] [script source]     - Domain d1mznc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1mzne_, region E [Jmol] [rasmolscript] [script source]     - Domain d1mzng_, region G [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1mzn_E] [1mzn_H] [1mzn] [1mzn_D] [1mzn_F] [1mzn_B] [1mzn_A] [1mzn_G] [1mzn_C] SWISS-PROT database: [Q15596] [P19793] Domain organization of [NCOA2_HUMAN] [RXRA_HUMAN] by SWISSPFAM Domain found in 1MZN: [HOLI ] by SMART

Other resources with information on 1MZN

Community annotation for 1MZN at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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