1N0N Oxidoreductase date Oct 14, 2002
title Catalytic And Structural Effects Of Amino-Acid Substitution In Human Manganese Superoxide Dismutase
authors G.E.O.Borgstahl, H.E.Parge, M.J.Hickey, W.F.Beyer Jr., R.A.Halle J.A.Tainer
compound source
Molecule: Superoxide Dismutase [Mn]
Chain: A, B
Ec: 1.15.1.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Sodab
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phmnsod4
symmetry Space Group: P 61 2 2
R_factor 0.224 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.815 79.815 240.882 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.82 Å
ligand MN, SO4 enzyme Oxidoreductase E.C.1.15.1.1 BRENDA
note 1N0N supersedes 1LUS
related structures by homologous chain: 1PM9, 1XDC
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (1n0n.pdb1.gz) 137 Kb
  • LPC: Ligand-Protein Contacts for 1N0N
  • CSU: Contacts of Structural Units for 1N0N
  • Likely Quarternary Molecular Structure file(s) for 1N0N
  • Retrieve 1N0N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1N0N from S2C, [Save to disk]
  • View 1N0N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1N0N
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1N0N, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1n0na1, region A:1-83 [Jmol] [rasmolscript] [script source]
        - Domain d1n0na2, region A:84-198 [Jmol] [rasmolscript] [script source]
        - Domain d1n0nb1, region B:1-83 [Jmol] [rasmolscript] [script source]
        - Domain d1n0nb2, region B:84-198 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1n0n_A] [1n0n_B] [1n0n]
  • SWISS-PROT database: [P04179]
  • Domain organization of [SODM_HUMAN] by SWISSPFAM
  • Other resources with information on 1N0N
  • Community annotation for 1N0N at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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