1N0V Translation date Oct 15, 2002
title Crystal Structure Of Elongation Factor 2
authors R.Joergensen, P.A.Ortiz, A.Carr-Schmid, P.Nissen, T.G.Kinzy, G.R.
compound source
Molecule: Elongation Factor 2
Chain: C, D
Synonym: Ef-2
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
symmetry Space Group: P 21 21 21
R_factor 0.232 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
98.835 114.546 177.310 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.85 Å
note 1N0V (Molecule of the Month:pdb81)
related structures by homologous chain: 1ZM4, 1ZM9
Gene
Ontology
ChainFunctionProcessComponent
D, C


Primary referenceTwo crystal structures demonstrate large conformational changes in the eukaryotic ribosomal translocase., Jorgensen R, Ortiz PA, Carr-Schmid A, Nissen P, Kinzy TG, Andersen GR, Nat Struct Biol 2003 May;10(5):379-85. PMID:12692531
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (260 Kb) [Save to disk]
  • Biological Unit Coordinates (1n0v.pdb1.gz) 131 Kb
  • Biological Unit Coordinates (1n0v.pdb2.gz) 130 Kb
  • CSU: Contacts of Structural Units for 1N0V
  • Likely Quarternary Molecular Structure file(s) for 1N0V
  • Structure Factors (382 Kb)
  • Retrieve 1N0V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1N0V from S2C, [Save to disk]
  • Re-refined 1n0v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1N0V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1N0V
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1N0V, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1n0vc2, region C:2-343 [Jmol] [rasmolscript] [script source]
        - Domain d1n0vc1, region C:344-481 [Jmol] [rasmolscript] [script source]
        - Domain d1n0vc4, region C:482-560 [Jmol] [rasmolscript] [script source]
        - Domain d1n0vc3, region C:561-725 [Jmol] [rasmolscript] [script source]
        - Domain d1n0vc5, region C:726-842 [Jmol] [rasmolscript] [script source]
        - Domain d1n0vd2, region D:2-343 [Jmol] [rasmolscript] [script source]
        - Domain d1n0vd1, region D:344-481 [Jmol] [rasmolscript] [script source]
        - Domain d1n0vd4, region D:482-560 [Jmol] [rasmolscript] [script source]
        - Domain d1n0vd3, region D:561-725 [Jmol] [rasmolscript] [script source]
        - Domain d1n0vd5, region D:726-842 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1n0v] [1n0v_C] [1n0v_D]
  • SWISS-PROT database: [P32324]
  • Domain organization of [EF2_YEAST] by SWISSPFAM
  • Domains found in 1N0V: [EFG_C] [EFG_IV ] by SMART
  • Other resources with information on 1N0V
  • Community annotation for 1N0V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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