1N27 Hormone Growth Factor date Oct 22, 2002
title Solution Structure Of The Pwwp Domain Of Mouse Hepatoma-Deri Factor, Related Protein 3
authors N.Nameki, T.Kigawa, S.Koshiba, N.Kobayashi, N.Tochio, M.Inoue, S.Y Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Hepatoma-Derived Growth Factor, Related Protein 3
Chain: A
Fragment: Pwwp Domain
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: 4632410h03
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P020408-01
Other_details: Cell-Free Protein Synthesis System
methodSolution NMR
related structures by homologous chain: 1RI0
Primary referenceSolution structure of the PWWP domain of the hepatoma-derived growth factor family., Nameki N, Tochio N, Koshiba S, Inoue M, Yabuki T, Aoki M, Seki E, Matsuda T, Fujikura Y, Saito M, Ikari M, Watanabe M, Terada T, Shirouzu M, Yoshida M, Hirota H, Tanaka A, Hayashizaki Y, Guntert P, Kigawa T, Yokoyama S, Protein Sci. 2005 Mar;14(3):756-64. Epub 2005 Feb 2. PMID:15689505
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (495 Kb) [Save to disk]
  • Biological Unit Coordinates (1n27.pdb1.gz) 25 Kb
  • CSU: Contacts of Structural Units for 1N27
  • Retrieve 1N27 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1N27 from S2C, [Save to disk]
    • View 1N27 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1N27
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1N27, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1n27a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1n27_A] [1n27]
  • SWISS-PROT database: [Q9JMG7]
  • Domain organization of [HDGR3_MOUSE] by SWISSPFAM
  • Domain found in 1N27: [PWWP ] by SMART
    • Other resources with information on 1N27
  • Community annotation for 1N27 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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