1N3B Transferase date Oct 25, 2002
title Crystal Structure Of Dephosphocoenzyme A Kinase From Escheri
authors N.O'Toole, J.A.R.G.Barbosa, Y.Li, L.W.Hung, A.Matte, M.Cygler, Mo Kingston Bacterial Structural Genomics Initiative (Bsgi)
compound source
Molecule: Dephospho-Coa Kinase
Chain: A, B, C
Synonym: Dephosphocoenzyme A Kinase
Ec: 2.7.1.24
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Coae
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dl41(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet20b Derivative
symmetry Space Group: P 1 21 1
R_factor 0.217 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.500 82.410 76.000 90.00 94.77 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand MSE, SO4 enzyme Transferase E.C.2.7.1.24 BRENDA
related structures by homologous chain: 1VHL, 1VIY
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceCrystal structure of a trimeric form of dephosphocoenzyme A kinase from Escherichia coli., O'Toole N, Barbosa JA, Li Y, Hung LW, Matte A, Cygler M, Protein Sci. 2003 Feb;12(2):327-36. PMID:12538896
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (1n3b.pdb1.gz) 103 Kb
  • LPC: Ligand-Protein Contacts for 1N3B
  • CSU: Contacts of Structural Units for 1N3B
  • Likely Quarternary Molecular Structure file(s) for 1N3B
  • Structure Factors (951 Kb)
  • Retrieve 1N3B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1N3B from S2C, [Save to disk]
  • Re-refined 1n3b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1N3B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1N3B
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1N3B, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1n3ba_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1n3bb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1n3bc_, region C [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1n3b_B] [1n3b_C] [1n3b] [1n3b_A]
  • SWISS-PROT database: [P0A6I9]
  • Domain organization of [COAE_ECOLI] by SWISSPFAM
  • Other resources with information on 1N3B
  • Community annotation for 1N3B at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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