1N3I Transferase date Oct 28, 2002
title Crystal Structure Of Mycobacterium Tuberculosis Pnp With Tra State Analog Dadme-Immh
authors A.Lewandowicz, W.Shi, G.B.Evans, P.C.Tyler, R.H.Furneaux, L.A.Bas D.S.Santos, S.C.Almo, V.L.Schramm
compound source
Molecule: Purine Nucleoside Phosphorylase
Chain: A, B, C
Synonym: Pnp
Ec: 2.4.2.1
Engineered: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-23a(+)
symmetry Space Group: P 32 2 1
R_factor 0.183 R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.842 102.842 128.763 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand DIH, PO4 enzyme Transferase E.C.2.4.2.1 BRENDA
related structures by homologous chain: 1G2O, 1I80
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceOver-the-barrier transition state analogues and crystal structure with Mycobacterium tuberculosis purine nucleoside phosphorylase., Lewandowicz A, Shi W, Evans GB, Tyler PC, Furneaux RH, Basso LA, Santos DS, Almo SC, Schramm VL, Biochemistry 2003 May 27;42(20):6057-66. PMID:12755607
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (125 Kb) [Save to disk]
  • Biological Unit Coordinates (1n3i.pdb1.gz) 121 Kb
  • LPC: Ligand-Protein Contacts for 1N3I
  • CSU: Contacts of Structural Units for 1N3I
  • Likely Quarternary Molecular Structure file(s) for 1N3I
  • Retrieve 1N3I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1N3I from S2C, [Save to disk]
  • View 1N3I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1N3I
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1N3I, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1n3ia_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1n3ib_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1n3ic_, region C [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1n3i_C] [1n3i_A] [1n3i] [1n3i_B]
  • SWISS-PROT database: [P0A538]
  • Domain organization of [PUNA_MYCTU] by SWISSPFAM
  • Other resources with information on 1N3I
  • Community annotation for 1N3I at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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