1N42 Lipid Binding Protein date Oct 30, 2002
title Crystal Structure Of Annexin V R149e Mutant
authors Y.D.Mo, B.Campos, T.R.Mealy, L.Commodore, J.F.Head, J.R.Dedman, B.
compound source
Molecule: Annexin V
Chain: A
Synonym: Lipocortin-V
Engineered: Yes
Mutation: Yes
 Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm101
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pkk233-2
symmetry Space Group: H 3
R_factor 0.193 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
157.535 157.535 36.383 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand CA, SO4 enzyme
related structures by homologous chain: 1BCW, 1N41
Gene
Ontology
ChainFunctionProcessComponent
A
  • calcium-transporting ATPase ...


    • Primary referenceInterfacial basic cluster in annexin V couples phospholipid binding and trimer formation on membrane surfaces., Mo Y, Campos B, Mealy TR, Commodore L, Head JF, Dedman JR, Seaton BA, J Biol Chem 2003 Jan 24;278(4):2437-43. Epub 2002 Oct 24. PMID:12401794
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (1n42.pdb1.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 1N42
  • CSU: Contacts of Structural Units for 1N42
  • Likely Quarternary Molecular Structure file(s) for 1N42
  • Structure Factors (344 Kb)
  • Retrieve 1N42 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1N42 from S2C, [Save to disk]
  • Re-refined 1n42 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1N42 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1N42
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1N42, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1n42a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1n42_A] [1n42]
  • SWISS-PROT database: [P14668]
  • Domain organization of [ANXA5_RAT] by SWISSPFAM
  • Domain found in 1N42: [ANX ] by SMART
    • Other resources with information on 1N42
  • Community annotation for 1N42 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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