1N48	Transferase Dna	date	Oct 30, 2002
title	Y-Family Dna Polymerase Dpo4 In Complex With Dna Containing Lesion
authors	H.Ling, F.Boudsocq, R.Woodgate, W.Yang
compound		source
Molecule: 5'-D(Gpgpgpgpgpapapgpgpapcptpa)-3' Chain: B Engineered: Yes Other_details: Template		Synthetic: Yes
Molecule: 5'-D(Cpap(3dr)Ptpapgptpcpcptptpcpcp 3'; Chain: C Engineered: Yes Other_details: Primer		Synthetic: Yes
Molecule: Dna Polymerase Iv Chain: A Synonym: Dpo4, Dna Polymerase Iv, Repair Dna Polymerase Of Dinbumuc Superfamily, Dinp; Ec: 2.7.7.7 Engineered: Yes		Organism_scientific: Sulfolobus Solfataricus Organism_taxid: 273057 Strain: P2 Gene: Dpo4 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet22bb
symmetry	Space Group: P 21 21 21	R_factor 0.204 R_Free 0.230
crystal cell	length a length b length c angle alpha angle beta angle gamma 75.546 88.458 92.389 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	3DR, ATP, CA	enzyme	Transferase E.C.2.7.7.7 BRENDA
related structures	by homologous chain: 1RYR, 1S0O
Gene Ontology	Chain Function Process Component A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk] Biological Unit Coordinates (1n48.pdb1.gz) 75 Kb LPC: Ligand-Protein Contacts for 1N48 CSU: Contacts of Structural Units for 1N48 Likely Quarternary Molecular Structure file(s) for 1N48 Structure Factors (292 Kb) Retrieve 1N48 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1N48 from S2C, [Save to disk] Re-refined 1n48 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1N48 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1N48

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1N48, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1n48a2, region A:1-240 [Jmol] [rasmolscript] [script source]     - Domain d1n48a1, region A:241-342 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1n48_C] [1n48_B] [1n48] [1n48_A] SWISS-PROT database: [Q97W02] Domain organization of [DPO42_SULSO] by SWISSPFAM

Other resources with information on 1N48

Community annotation for 1N48 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---