1N4F Hydrolase date Oct 31, 2002
title Para-Arsanilate Derivative Of Hen Egg-White Lysozyme
authors P.Retailleau, T.Prange
compound source
Molecule: Lysozyme C
Chain: A
Synonym: 1,4-Beta-N-Acetylmuramidase C, Allergen Gal D 4, Gal D Iv;
Ec: 3.2.1.17
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Other_details: Hen Egg White
symmetry Space Group: P 43 21 2
R_factor 0.164 R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.764 76.764 38.252 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.78 Å
ligand ASR, EDO, NA enzyme Hydrolase E.C.3.2.1.17 BRENDA
related structures by homologous chain: 1FN5, 1JEF
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePhasing power at the K absorption edge of organic arsenic., Retailleau P, Prange T, Acta Crystallogr D Biol Crystallogr 2003 May;59(Pt 5):887-96. PMID:12777806
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (1n4f.pdb1.gz) 25 Kb
  • LPC: Ligand-Protein Contacts for 1N4F
  • CSU: Contacts of Structural Units for 1N4F
  • Likely Quarternary Molecular Structure file(s) for 1N4F
  • Structure Factors (78 Kb)
  • Retrieve 1N4F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1N4F from S2C, [Save to disk]
  • Re-refined 1n4f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1N4F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1N4F
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1N4F, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1n4fa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1n4f] [1n4f_A]
  • SWISS-PROT database: [P00698]
  • Domain organization of [LYSC_CHICK] by SWISSPFAM
  • Domain found in 1N4F: [LYZ1 ] by SMART
  • Other resources with information on 1N4F
  • Community annotation for 1N4F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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