1N5C Crystal Structure Analysis of the B-DNA Dodecamer CGCGAATT(ethenoC)GCG date
authors Freisinger, E., Fernandes, A., Grollman, A.P., Kisker, C.F.
compound source
symmetry
R_factor
R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.79
ligand EDC, NA enzyme
Primary referenceCrystallographic characterization of an exocyclic DNA adduct: 3,N4-etheno-2'-deoxycytidine in the dodecamer 5'-CGCGAATTepsilonCGCG-3'., Freisinger E, Fernandes A, Grollman AP, Kisker C, J Mol Biol 2003 Jun 13;329(4):685-97. PMID:12787670
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (11 Kb) [Save to disk]
  • Biological Unit Coordinates (1n5c.pdb1.gz) 11 Kb
  • LPC: Ligand-Protein Contacts for 1N5C
  • CSU: Contacts of Structural Units for 1N5C
  • Likely Quarternary Molecular Structure file(s) for 1N5C
  • Structure Factors (38 Kb)
  • Retrieve 1N5C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1N5C from S2C, [Save to disk]
  • Re-refined 1n5c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1N5C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1N5C
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1N5C, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1n5c] [1n5c_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1N5C
  • Community annotation for 1N5C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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