1N5W	Oxidoreductase	date	Nov 07, 2002
title	Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh); Oxid
authors	H.Dobbek, L.Gremer, R.Kiefersauer, R.Huber, O.Meyer
compound		source
Molecule: Carbon Monoxide Dehydrogenase Small Chain Chain: A, D Synonym: Co Dehydrogenase Subunit S Ec: 1.2.99.2		Organism_scientific: Oligotropha Carboxidovorans Organism_taxid: 504832 Strain: Om5
Molecule: Carbon Monoxide Dehydrogenase Large Chain Chain: B, E Synonym: Co Dehydrogenase Subunit L Ec: 1.2.99.2		Organism_scientific: Oligotropha Carboxidovorans Organism_taxid: 504832 Strain: Om5
Molecule: Carbon Monoxide Dehydrogenase Medium Chain Chain: C, F Synonym: Co Dehydrogenase Subunit M Ec: 1.2.99.2		Organism_scientific: Oligotropha Carboxidovorans Organism_taxid: 504832 Strain: Om5
symmetry	Space Group: P 21 21 21	R_factor 0.135 R_Free 0.171
crystal cell	length a length b length c angle alpha angle beta angle gamma 119.295 132.088 159.825 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.50 Å
ligand	CUM, FAD, FES, MCN, PO4	enzyme	Oxidoreductase E.C.1.2.99.2 BRENDA
note	1N5W supersedes 1QJ2
related structures	by homologous chain: 1FFV, 1N61
Gene Ontology	Chain Function Process Component A, D electron transfer activity E, B F, C
Primary reference	Catalysis at a dinuclear [CuSMo(==O)OH] cluster in a CO dehydrogenase resolved at 1.1-A resolution., Dobbek H, Gremer L, Kiefersauer R, Huber R, Meyer O, Proc Natl Acad Sci U S A 2002 Dec 10;99(25):15971-6. PMID:12475995

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (856 Kb) [Save to disk] Biological Unit Coordinates (1n5w.pdb1.gz) 846 Kb LPC: Ligand-Protein Contacts for 1N5W CSU: Contacts of Structural Units for 1N5W Likely Quarternary Molecular Structure file(s) for 1N5W Retrieve 1N5W in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1N5W from S2C, [Save to disk]

View 1N5W in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1N5W

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1N5W 1N5WA 1N5WB 1N5WC 1N5WD 1N5WE 1N5WF from the CEP Server. Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1N5W, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1n5wa2, region A:3-81 [Jmol] [rasmolscript] [script source]     - Domain d1n5wa1, region A:82-163 [Jmol] [rasmolscript] [script source]     - Domain d1n5wb2, region B:147-809 [Jmol] [rasmolscript] [script source]     - Domain d1n5wb1, region B:6-146 [Jmol] [rasmolscript] [script source]     - Domain d1n5wc2, region C:1-177 [Jmol] [rasmolscript] [script source]     - Domain d1n5wc1, region C:178-287 [Jmol] [rasmolscript] [script source]     - Domain d1n5wd2, region D:3-81 [Jmol] [rasmolscript] [script source]     - Domain d1n5wd1, region D:82-160 [Jmol] [rasmolscript] [script source]     - Domain d1n5we2, region E:147-809 [Jmol] [rasmolscript] [script source]     - Domain d1n5we1, region E:15-146 [Jmol] [rasmolscript] [script source]     - Domain d1n5wf2, region F:1-177 [Jmol] [rasmolscript] [script source]     - Domain d1n5wf1, region F:178-286 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1n5w_A] [1n5w_C] [1n5w_D] [1n5w_F] [1n5w_B] [1n5w] [1n5w_E] SWISS-PROT database: [P19919] [P19920] [P19921] Domain organization of [DCML_OLICO] [DCMM_OLICO] [DCMS_OLICO] by SWISSPFAM Domains found in 1N5W: [Ald_Xan_dh_C] [CO_deh_flav_C ] by SMART

Other resources with information on 1N5W

Community annotation for 1N5W at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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