1N63 Oxidoreductase date Nov 08, 2002
title Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh); Carb Monoxide Reduced State
authors H.Dobbek, L.Gremer, R.Kiefersauer, R.Huber, O.Meyer
compound source
Molecule: Carbon Monoxide Dehydrogenase Small Chain
Chain: A, D
Synonym: Co Dehydrogenase Subunit S
Ec: 1.2.99.2
 Organism_scientific: Oligotropha Carboxidovorans
Organism_taxid: 504832
Strain: Om5

Molecule: Carbon Monoxide Dehydrogenase Large Chain
Chain: B, E
Synonym: Co Dehydrogenase Subunit L
Ec: 1.2.99.2
Organism_scientific: Oligotropha Carboxidovorans
Organism_taxid: 504832
Strain: Om5

Molecule: Carbon Monoxide Dehydrogenase Medium Chain
Chain: C, F
Synonym: Co Dehydrogenase Subunit M
Ec: 1.2.99.2
Organism_scientific: Oligotropha Carboxidovorans
Organism_taxid: 504832
Strain: Om5
symmetry Space Group: P 21 21 21
R_factor 0.149 R_Free 0.185
crystal
cell
length a length b length c angle alpha angle beta angle gamma
118.962 131.270 159.648 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.21 Å
ligand CUN, FAD, FES, MCN, PO4 enzyme Oxidoreductase E.C.1.2.99.2 BRENDA
related structures by homologous chain: 1N60, 1N61
Gene
Ontology
ChainFunctionProcessComponent
A, D
  • electron transfer activity


    • E, B


    F, C


    Primary referenceCatalysis at a dinuclear [CuSMo(==O)OH] cluster in a CO dehydrogenase resolved at 1.1-A resolution., Dobbek H, Gremer L, Kiefersauer R, Huber R, Meyer O, Proc Natl Acad Sci U S A 2002 Dec 10;99(25):15971-6. PMID:12475995
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (879 Kb) [Save to disk]
  • Biological Unit Coordinates (1n63.pdb1.gz) 869 Kb
  • LPC: Ligand-Protein Contacts for 1N63
  • CSU: Contacts of Structural Units for 1N63
  • Likely Quarternary Molecular Structure file(s) for 1N63
  • Retrieve 1N63 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1N63 from S2C, [Save to disk]
    • View 1N63 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1N63
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 1N63 1N63A 1N63B 1N63C 1N63D 1N63E 1N63F from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1N63, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1n63a2, region A:3-81 [Jmol] [rasmolscript] [script source]
        - Domain d1n63a1, region A:82-162 [Jmol] [rasmolscript] [script source]
        - Domain d1n63b2, region B:147-809 [Jmol] [rasmolscript] [script source]
        - Domain d1n63b1, region B:5-146 [Jmol] [rasmolscript] [script source]
        - Domain d1n63c2, region C:1-177 [Jmol] [rasmolscript] [script source]
        - Domain d1n63c1, region C:178-287 [Jmol] [rasmolscript] [script source]
        - Domain d1n63d2, region D:3-81 [Jmol] [rasmolscript] [script source]
        - Domain d1n63d1, region D:82-160 [Jmol] [rasmolscript] [script source]
        - Domain d1n63e2, region E:147-809 [Jmol] [rasmolscript] [script source]
        - Domain d1n63e1, region E:15-146 [Jmol] [rasmolscript] [script source]
        - Domain d1n63f2, region F:1-177 [Jmol] [rasmolscript] [script source]
        - Domain d1n63f1, region F:178-286 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1n63_C] [1n63] [1n63_F] [1n63_D] [1n63_A] [1n63_B] [1n63_E]
  • SWISS-PROT database: [P19919] [P19920] [P19921]
  • Domain organization of [DCML_OLICO] [DCMM_OLICO] [DCMS_OLICO] by SWISSPFAM
  • Domains found in 1N63: [Ald_Xan_dh_C] [CO_deh_flav_C ] by SMART
    • Other resources with information on 1N63
  • Community annotation for 1N63 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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  • Images from IMB Jena Image Library of Biological Macromolecules.

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