1N6F	Hydrolase	date	Nov 10, 2002
title	Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
authors	J.S.Kim, M.Groll, R.Huber, H.Brandstetter
compound		source
Molecule: Tricorn Protease Chain: A, B, C, D, E, F Ec: 3.4.21.- Engineered: Yes		Organism_scientific: Thermoplasma Acidophilum Organism_taxid: 2303 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Prset6c
symmetry	Space Group: P 1 21 1	R_factor 0.247 R_Free 0.280
crystal cell	length a length b length c angle alpha angle beta angle gamma 95.670 244.550 158.320 90.00 104.59 90.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	DKT	enzyme	Hydrolase E.C.3.4.21 BRENDA
related structures	by homologous chain: 1N6D, 1N6E
Gene Ontology	Chain Function Process Component F, A, D, C, E, B
Primary reference	Navigation inside a protease: substrate selection and product exit in the tricorn protease from Thermoplasma acidophilum., Kim JS, Groll M, Musiol HJ, Behrendt R, Kaiser M, Moroder L, Huber R, Brandstetter H, J Mol Biol 2002 Dec 13;324(5):1041-50. PMID:12470958

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (989 Kb) [Save to disk] Biological Unit Coordinates (1n6f.pdb1.gz) 980 Kb LPC: Ligand-Protein Contacts for 1N6F CSU: Contacts of Structural Units for 1N6F Likely Quarternary Molecular Structure file(s) for 1N6F Structure Factors (1637 Kb) Retrieve 1N6F in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1N6F from S2C, [Save to disk] Re-refined 1n6f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1N6F in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1N6F

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1N6F, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1n6fa3, region A:320-679 [Jmol] [rasmolscript] [script source]     - Domain d1n6fa2, region A:39-319 [Jmol] [rasmolscript] [script source]     - Domain d1n6fa4, region A:680-762,A:854-1061 [Jmol] [rasmolscript] [script source]     - Domain d1n6fa1, region A:763-853 [Jmol] [rasmolscript] [script source]     - Domain d1n6fb3, region B:320-679 [Jmol] [rasmolscript] [script source]     - Domain d1n6fb2, region B:39-319 [Jmol] [rasmolscript] [script source]     - Domain d1n6fb4, region B:680-762,B:854-1061 [Jmol] [rasmolscript] [script source]     - Domain d1n6fb1, region B:763-853 [Jmol] [rasmolscript] [script source]     - Domain d1n6fc3, region C:320-679 [Jmol] [rasmolscript] [script source]     - Domain d1n6fc2, region C:39-319 [Jmol] [rasmolscript] [script source]     - Domain d1n6fc4, region C:680-762,C:854-1061 [Jmol] [rasmolscript] [script source]     - Domain d1n6fc1, region C:763-853 [Jmol] [rasmolscript] [script source]     - Domain d1n6fd3, region D:320-679 [Jmol] [rasmolscript] [script source]     - Domain d1n6fd2, region D:39-319 [Jmol] [rasmolscript] [script source]     - Domain d1n6fd4, region D:680-762,D:854-1061 [Jmol] [rasmolscript] [script source]     - Domain d1n6fd1, region D:763-853 [Jmol] [rasmolscript] [script source]     - Domain d1n6fe3, region E:320-679 [Jmol] [rasmolscript] [script source]     - Domain d1n6fe2, region E:39-319 [Jmol] [rasmolscript] [script source]     - Domain d1n6fe4, region E:680-762,E:854-1061 [Jmol] [rasmolscript] [script source]     - Domain d1n6fe1, region E:763-853 [Jmol] [rasmolscript] [script source]     - Domain d1n6ff3, region F:320-679 [Jmol] [rasmolscript] [script source]     - Domain d1n6ff2, region F:39-319 [Jmol] [rasmolscript] [script source]     - Domain d1n6ff4, region F:680-762,F:854-1061 [Jmol] [rasmolscript] [script source]     - Domain d1n6ff1, region F:763-853 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1n6f_B] [1n6f] [1n6f_C] [1n6f_A] [1n6f_F] [1n6f_D] [1n6f_E] SWISS-PROT database: [P96086] Domain organization of [TRI_THEAC] by SWISSPFAM Domain found in 1N6F: [TSPc ] by SMART

Other resources with information on 1N6F

Community annotation for 1N6F at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---