1N6J	Transcription Dna	date	Nov 11, 2002
title	Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2
authors	A.Han, F.Pan, J.C.Stroud, H.D.Youn, J.O.Liu, L.Chen
compound		source
Molecule: 5'-D(Apgpcptpaptptptpaptpapapgpc)-3 Chain: C Engineered: Yes		Synthetic: Yes
Molecule: 5'-D(Gpcptptpaptpapapaptpapgpcpt)-3 Chain: D Engineered: Yes		Synthetic: Yes
Molecule: Myocyte-Specific Enhancer Factor 2b Chain: A, B Fragment: Residues 2-91, Mads-Boxmef2s Domain Synonym: Serum Response Factor-Like Protein 2, Xmef2, Rsrfr Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mef2b Or Xmef2 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Calcineurin-Binding Protein Cabin 1 Chain: G Fragment: Residues 101-132, Cabin1, Mef2-Binding Domain Synonym: Calcineurin Inhibitor, Chain Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cabin1 Or Kiaa0330 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 41 2 2	R_factor 0.243 R_Free 0.268
crystal cell	length a length b length c angle alpha angle beta angle gamma 70.140 70.140 151.880 90.00 90.00 90.00
method	X-Ray Diffraction, 2 Models	resolution	2.20 Å
note	1N6J is a representative structure
related structures	by homologous chain: 1EGW, 1TQE
Gene Ontology	Chain Function Process Component A, B
Primary reference	Sequence-specific recruitment of transcriptional co-repressor Cabin1 by myocyte enhancer factor-2., Han A, Pan F, Stroud JC, Youn HD, Liu JO, Chen L, Nature 2003 Apr 17;422(6933):730-4. PMID:12700764

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk] Biological Unit Coordinates (1n6j.pdb1.gz) 50 Kb CSU: Contacts of Structural Units for 1N6J Likely Quarternary Molecular Structure file(s) for 1N6J Structure Factors (147 Kb) Retrieve 1N6J in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1N6J from S2C, [Save to disk]

View 1N6J in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1N6J

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1N6J, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1n6ja_, region A [Jmol] [rasmolscript] [script source]     - Domain d1n6jb_, region B [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1n6j_G] [1n6j_D] [1n6j] [1n6j_C] [1n6j_B] [1n6j_A] SWISS-PROT database: [Q9Y6J0] [Q02080] Domain organization of [CABIN_HUMAN] [MEF2B_HUMAN] by SWISSPFAM Domain found in 1N6J: [MADS ] by SMART

Other resources with information on 1N6J

Community annotation for 1N6J at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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