1N8I Lyase date Nov 20, 2002
title Biochemical And Structural Studies Of Malate Synthase From Mycobacterium Tuberculosis
authors C.V.Smith, C.C.Huang, A.Miczak, D.G.Russell, J.C.Sacchettini, K.H Bentrup, Tb Structural Genomics Consortium (Tbsgc)
compound source
Molecule: Probable Malate Synthase G
Chain: A
Ec: 4.1.3.2
Engineered: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773
Gene: Glcb
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 43 21 2
R_factor 0.185 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.095 78.095 223.180 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand GLV, MG enzyme Lyase E.C.4.1.3.2 BRENDA
related structures by homologous chain: 1N8W
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceBiochemical and structural studies of malate synthase from Mycobacterium tuberculosis., Smith CV, Huang CC, Miczak A, Russell DG, Sacchettini JC, Honer zu Bentrup K, J Biol Chem 2003 Jan 17;278(3):1735-43. PMID:12393860
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk]
  • Biological Unit Coordinates (1n8i.pdb1.gz) 114 Kb
  • LPC: Ligand-Protein Contacts for 1N8I
  • CSU: Contacts of Structural Units for 1N8I
  • Likely Quarternary Molecular Structure file(s) for 1N8I
  • Retrieve 1N8I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1N8I from S2C, [Save to disk]
  • View 1N8I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1N8I
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1N8I, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1n8ia_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1n8i] [1n8i_A]
  • SWISS-PROT database: [P0A5J4]
  • Domain organization of [MASZ_MYCTU] by SWISSPFAM
  • Other resources with information on 1N8I
  • Community annotation for 1N8I at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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