1N8Y	Transferase	date	Nov 21, 2002
title	Crystal Structure Of The Extracellular Region Of Rat Her2
authors	H.S.Cho, K.Mason, K.X.Ramyar, A.M.Stanley, S.B.Gabelli, D.W.Denn D.J.Leahy
compound		source
Molecule: Protooncoprotein Chain: C Fragment: Extracellular Region (Residues 26-633) Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Gene: Neu Expression_system: Cricetulus Griseus Expression_system_common: Chinese Hamster Expression_system_taxid: 10029 Expression_system_strain: Cho(Lec1) Expression_system_vector_type: Plasmid Expression_system_plasmid: Psghv0
symmetry	Space Group: P 21 21 2	R_factor 0.224 R_Free 0.282
crystal cell	length a length b length c angle alpha angle beta angle gamma 130.870 116.400 55.370 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	NAG	enzyme
related structures	by homologous chain: 1N8Z
Gene Ontology	Chain Function Process Component C
Primary reference	Structure of the extracellular region of HER2 alone and in complex with the Herceptin Fab., Cho HS, Mason K, Ramyar KX, Stanley AM, Gabelli SB, Denney DW Jr, Leahy DJ, Nature 2003 Feb 13;421(6924):756-60. PMID:12610629

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk] Biological Unit Coordinates (1n8y.pdb1.gz) 93 Kb LPC: Ligand-Protein Contacts for 1N8Y CSU: Contacts of Structural Units for 1N8Y Likely Quarternary Molecular Structure file(s) for 1N8Y Structure Factors (490 Kb) Retrieve 1N8Y in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1N8Y from S2C, [Save to disk] Re-refined 1n8y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1N8Y in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1N8Y

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1N8Y, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1n8yc1, region C:1-165 [Jmol] [rasmolscript] [script source]     - Domain d1n8yc3, region C:166-322 [Jmol] [rasmolscript] [script source]     - Domain d1n8yc2, region C:323-488 [Jmol] [rasmolscript] [script source]     - Domain d1n8yc4, region C:489-608 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1n8y_C] [1n8y] SWISS-PROT database: [P06494] Domain organization of [ERBB2_RAT] by SWISSPFAM Domain found in 1N8Y: [FU ] by SMART

Other resources with information on 1N8Y

Community annotation for 1N8Y at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---