1N99 CRYSTAL STRUCTURE OF THE PDZ TANDEM OF HUMAN SYNTENIN date
authors Kang, B.S., Cooper, D.R., Jelen, F., Devedjiev, Y., Derewenda, U., Dauter, Z., Otlewski, J., Derewenda, Z.S.
compound source
symmetry
R_factor
R_Free 0.2268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.94
ligand MSE enzyme
related structures by homologous chain: 1OBY
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referencePDZ tandem of human syntenin: crystal structure and functional properties., Kang BS, Cooper DR, Jelen F, Devedjiev Y, Derewenda U, Dauter Z, Otlewski J, Derewenda ZS, Structure (Camb) 2003 Apr;11(4):459-68. PMID:12679023
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (1n99.pdb1.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 1N99
  • CSU: Contacts of Structural Units for 1N99
  • Likely Quarternary Molecular Structure file(s) for 1N99
  • Structure Factors (318 Kb)
  • Retrieve 1N99 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1N99 from S2C, [Save to disk]
  • Re-refined 1n99 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1N99 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1N99
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1N99, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1n99a1, region A:112-194 [Jmol] [rasmolscript] [script source]
        - Domain d1n99a2, region A:195-273 [Jmol] [rasmolscript] [script source]
        - Domain d1n99b1, region B:110-194 [Jmol] [rasmolscript] [script source]
        - Domain d1n99b2, region B:195-272 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1n99_B] [1n99] [1n99_A]
  • SWISS-PROT database: [O00560]
  • Belongs to the ezrin/radixin/moesin-binding phosphoprotein 50 (ebp50) family according to TCDB.
  • Domain organization of [SDCB1_HUMAN] by SWISSPFAM
  • Domain found in 1N99: [PDZ ] by SMART
    • Other resources with information on 1N99
  • Community annotation for 1N99 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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