1NAV Membrane Protein date Nov 29, 2002
title Thyroid Receptor Alpha In Complex With An Agonist Selective Thyroid Receptor Beta1
authors L.Ye, Y.L.Li, K.Mellstrom, C.Mellin, L.G.Bladh, K.Koehler, N.Garg, A.M.Garcia Collazo, C.Litten, B.Husman, K.Persson, J.Ljunggren, P.G.Sleph, R.George, J.Malm
compound source
Molecule: Hormone Receptor Alpha 1, Thra1
Chain: A
Fragment: Ligand Binding Domain (Residues 148-408)
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 65 2 2
R_factor 0.246 R_Free 0.279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
109.319 109.319 134.652 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand IH5, SO4 BindingDB enzyme
related structures by homologous chain: 1NAX, 1XZX
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThyroid receptor ligands. 1. Agonist ligands selective for the thyroid receptor beta1., Ye L, Li YL, Mellstrom K, Mellin C, Bladh LG, Koehler K, Garg N, Garcia Collazo AM, Litten C, Husman B, Persson K, Ljunggren J, Grover G, Sleph PG, George R, Malm J, J Med Chem 2003 Apr 24;46(9):1580-8. PMID:12699376
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (1nav.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 1NAV
  • CSU: Contacts of Structural Units for 1NAV
  • Likely Quarternary Molecular Structure file(s) for 1NAV
  • Structure Factors (124 Kb)
  • Retrieve 1NAV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NAV from S2C, [Save to disk]
  • Re-refined 1nav structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1NAV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1NAV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1NAV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1nava_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nav_A] [1nav]
  • SWISS-PROT database: [P10827]
  • Domain organization of [THA_HUMAN] by SWISSPFAM
  • Domain found in 1NAV: [HOLI ] by SMART
  • Other resources with information on 1NAV
  • Community annotation for 1NAV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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