1NBM Atp Synthase date Apr 30, 1998
title The Structure Of Bovine F1-Atpase Covalently Inhibited With 7-Nitrobenzofurazan
authors G.L.Orriss, A.G.W.Leslie, K.Braig, J.E.Walker
compound source
Molecule: F1-Atpase
Chain: A, B, C
Synonym: Bovine Mitochondrial F1-Atpase
Ec: 3.6.1.34
 Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Heart
Tissue: Muscle
Organelle: Mitochondrion

Molecule: F1-Atpase
Chain: D, F
Synonym: Bovine Mitochondrial F1-Atpase
Ec: 3.6.1.34
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Heart
Tissue: Muscle
Organelle: Mitochondrion

Molecule: F1-Atpase
Chain: E
Synonym: Bovine Mitochondrial F1-Atpase
Ec: 3.6.1.34
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Heart
Tissue: Muscle
Organelle: Mitochondrion

Molecule: F1-Atpase
Chain: G
Synonym: Bovine Mitochondrial F1-Atpase
Ec: 3.6.1.34
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Heart
Tissue: Muscle
Organelle: Mitochondrion
symmetry Space Group: P 21 21 21
R_factor 0.207 R_Free 0.297
crystal
cell
length a length b length c angle alpha angle beta angle gamma
281.000 106.600 138.800 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand ADP, ATP, MG, PO4, TYN enzyme Hydrolase E.C.3.6.1.34 BRENDA
related structures by homologous chain: 1H8H
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


F, D, E


G


Primary referenceBovine F1-ATPase covalently inhibited with 4-chloro-7-nitrobenzofurazan: the structure provides further support for a rotary catalytic mechanism., Orriss GL, Leslie AG, Braig K, Walker JE, Structure 1998 Jul 15;6(7):831-7. PMID:9687365
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (465 Kb) [Save to disk]
  • Biological Unit Coordinates (1nbm.pdb1.gz) 457 Kb
  • LPC: Ligand-Protein Contacts for 1NBM
  • CSU: Contacts of Structural Units for 1NBM
  • Likely Quarternary Molecular Structure file(s) for 1NBM
  • Structure Factors (672 Kb)
  • Retrieve 1NBM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NBM from S2C, [Save to disk]
  • Re-refined 1nbm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1NBM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1NBM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1NBM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1nbma2, region A:24-94 [Jmol] [rasmolscript] [script source]
        - Domain d1nbma1, region A:380-510 [Jmol] [rasmolscript] [script source]
        - Domain d1nbma3, region A:95-379 [Jmol] [rasmolscript] [script source]
        - Domain d1nbmb2, region B:24-94 [Jmol] [rasmolscript] [script source]
        - Domain d1nbmb1, region B:380-510 [Jmol] [rasmolscript] [script source]
        - Domain d1nbmb3, region B:95-379 [Jmol] [rasmolscript] [script source]
        - Domain d1nbmc2, region C:19-94 [Jmol] [rasmolscript] [script source]
        - Domain d1nbmc1, region C:380-510 [Jmol] [rasmolscript] [script source]
        - Domain d1nbmc3, region C:95-379 [Jmol] [rasmolscript] [script source]
        - Domain d1nbmd1, region D:358-475 [Jmol] [rasmolscript] [script source]
        - Domain d1nbmd3, region D:82-357 [Jmol] [rasmolscript] [script source]
        - Domain d1nbmd2, region D:9-81 [Jmol] [rasmolscript] [script source]
        - Domain d1nbme1, region E:358-474 [Jmol] [rasmolscript] [script source]
        - Domain d1nbme3, region E:82-357 [Jmol] [rasmolscript] [script source]
        - Domain d1nbme2, region E:9-81 [Jmol] [rasmolscript] [script source]
        - Domain d1nbmf1, region F:358-474 [Jmol] [rasmolscript] [script source]
        - Domain d1nbmf3, region F:82-357 [Jmol] [rasmolscript] [script source]
        - Domain d1nbmf2, region F:9-81 [Jmol] [rasmolscript] [script source]
        - Domain d1nbmg_, region G [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nbm_A] [1nbm_C] [1nbm] [1nbm_F] [1nbm_G] [1nbm_B] [1nbm_E] [1nbm_D]
  • SWISS-PROT database: [P19483] [P00829] [P05631]
  • Domain organization of [ATPA_BOVIN] [ATPB_BOVIN] [ATPG_BOVIN] by SWISSPFAM
  • Domain found in 1NBM: [AAA ] by SMART
    • Other resources with information on 1NBM
  • Community annotation for 1NBM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1NBM from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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