1NCR Virus date Dec 05, 2002
title The Structure Of Rhinovirus 16 When Complexed With Pleconaril, An Antiviral Compound
authors Y.Zhang, A.A.Simpson, C.M.Bator, S.Chakravarty, D.C.Pevear, G.A.Skochko, T.M.Tull, G.Diana, M.G.Rossmann
compound source
Molecule: Coat Protein Vp1
Chain: A
 Organism_scientific: Human Rhinovirus 16
Organism_taxid: 31708

Molecule: Coat Protein Vp2
Chain: B
Organism_scientific: Human Rhinovirus 16
Organism_taxid: 31708

Molecule: Coat Protein Vp3
Chain: C
Organism_scientific: Human Rhinovirus 16
Organism_taxid: 31708

Molecule: Coat Protein Vp4
Chain: D
Organism_scientific: Human Rhinovirus 16
Organism_taxid: 31708
symmetry Space Group: P 2 21 21
R_factor 0.243 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
359.494 343.657 332.184 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand MYR, W11, ZN enzyme
related structures by homologous chain: 1FPN, 1QJU
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


D


Primary referenceStructural and virological studies of the stages of virus replication that are affected by antirhinovirus compounds., Zhang Y, Simpson AA, Ledford RM, Bator CM, Chakravarty S, Skochko GA, Demenczuk TM, Watanyar A, Pevear DC, Rossmann MG, J Virol 2004 Oct;78(20):11061-9. PMID:15452226
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (141 Kb) [Save to disk]
  • Biological Unit Coordinates (1ncr.pdb1.gz) 7976 Kb
  • LPC: Ligand-Protein Contacts for 1NCR
  • CSU: Contacts of Structural Units for 1NCR
  • Likely Quarternary Molecular Structure file(s) for 1NCR
  • Retrieve 1NCR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NCR from S2C, [Save to disk]
    • View 1NCR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1NCR
  • VIPERdb: visual, structural and computational analysis of 1NCR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1NCR, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ncra_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ncrc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1ncr.1, region D:,B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ncr_A] [1ncr_C] [1ncr_D] [1ncr] [1ncr_B]
  • SWISS-PROT database: [Q82122]
  • Domain organization of [POLG_HRV16] by SWISSPFAM
    • Other resources with information on 1NCR
  • Community annotation for 1NCR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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