1ND3	Virus	date	Dec 06, 2002
title	The Structure Of Hrv16, When Complexed With Pleconaril, An A Compound
authors	Y.Zhang, A.A.Simpson, C.M.Bator, S.Chakravarty, D.C.Pevear, G.A.S T.M.Tull, G.Diana, M.G.Rossmann
compound		source
Molecule: Coat Protein Vp1 Chain: A		Organism_scientific: Human Rhinovirus 16 Organism_taxid: 31708 Cell_line: Hela Cells
Molecule: Coat Protein Vp2 Chain: B		Organism_scientific: Human Rhinovirus 16 Organism_taxid: 31708 Cell_line: Hela Cells
Molecule: Coat Protein Vp3 Chain: C		Organism_scientific: Human Rhinovirus 16 Organism_taxid: 31708 Cell_line: Hela Cells
Molecule: Coat Protein Vp4 Chain: D		Organism_scientific: Human Rhinovirus 16 Organism_taxid: 31708 Cell_line: Hela Cells
symmetry	Space Group: P 2 21 21	R_factor 0.247 R_Free 0.243
crystal cell	length a length b length c angle alpha angle beta angle gamma 360.301 343.331 332.632 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	W11, ZN	enzyme
related structures	by homologous chain: 1AYN, 1QJY, 1R09
Gene Ontology	Chain Function Process Component A, C, B D
Primary reference	Structural and virological studies of the stages of virus replication that are affected by antirhinovirus compounds., Zhang Y, Simpson AA, Ledford RM, Bator CM, Chakravarty S, Skochko GA, Demenczuk TM, Watanyar A, Pevear DC, Rossmann MG, J Virol 2004 Oct;78(20):11061-9. PMID:15452226

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (142 Kb) [Save to disk] Biological Unit Coordinates (1nd3.pdb1.gz) 7994 Kb LPC: Ligand-Protein Contacts for 1ND3 CSU: Contacts of Structural Units for 1ND3 Likely Quarternary Molecular Structure file(s) for 1ND3 Retrieve 1ND3 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1ND3 from S2C, [Save to disk]

View 1ND3 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1ND3

VIPERdb: visual, structural and computational analysis of 1ND3 Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1ND3, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1nd3a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1nd3c_, region C [Jmol] [rasmolscript] [script source]     - Domain d1nd3.1, region D:,B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1nd3] [1nd3_B] [1nd3_A] [1nd3_C] [1nd3_D] SWISS-PROT database: [Q82122] Domain organization of [POLG_HRV16] by SWISSPFAM

Other resources with information on 1ND3

Community annotation for 1ND3 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---