1NDN	MOLECULAR STRUCTURE OF NICKED DNA. MODEL T4	date
authors	Aymani, J., Coll, M., Marel, G.A.Van.Der., Boom, J.H.Van., Wang, A.H.J., Rich, A.
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	3.00
Primary reference	Molecular structure of nicked DNA: a substrate for DNA repair enzymes., Aymami J, Coll M, van der Marel GA, van Boom JH, Wang AH, Rich A, Proc Natl Acad Sci U S A 1990 Apr;87(7):2526-30. PMID:2320572

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (13 Kb) [Save to disk] Biological Unit Coordinates (1ndn.pdb1.gz) 10 Kb CSU: Contacts of Structural Units for 1NDN Likely Quarternary Molecular Structure file(s) for 1NDN Retrieve 1NDN in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1NDN from S2C, [Save to disk]

View 1NDN in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1NDN

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1NDN, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ndn_C] [1ndn_A] [1ndn] [1ndn_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 1NDN

Community annotation for 1NDN at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---