1NE2 Structural Genomics, Unknown Function date Dec 10, 2002
title Crystal Structure Of Thermoplasma Acidophilum 1320 (Apc5513)
authors Y.Kim, A.Joachimiak, A.Edwards, X.Xu, D.Christendat, Midwest Cent Structural Genomics (Mcsg)
compound source
Molecule: Hypothetical Protein Ta1320
Chain: A, B
Engineered: Yes
 Organism_scientific: Thermoplasma Acidophilum
Organism_taxid: 2303
Gene: Ta1320
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.209 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.086 53.359 149.807 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand FMT, MSE enzyme
related structures by homologous chain: 1CZ5
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (1ne2.pdb1.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 1NE2
  • CSU: Contacts of Structural Units for 1NE2
  • Likely Quarternary Molecular Structure file(s) for 1NE2
  • Structure Factors (814 Kb)
  • Retrieve 1NE2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NE2 from S2C, [Save to disk]
  • Re-refined 1ne2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1NE2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1NE2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1NE2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ne2a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ne2b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ne2] [1ne2_A] [1ne2_B]
  • SWISS-PROT database: [Q9HIL9]
  • Domain organization of [Q9HIL9_THEAC] by SWISSPFAM
    • Other resources with information on 1NE2
  • Community annotation for 1NE2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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