1NH4 Virus date Dec 18, 2002
title Structure Of The Coat Protein In Fd Filamentous Bacteriophag Particles
authors A.C.Zeri, M.F.Mesleh, A.A.Nevzorov, S.J.Opella
compound source
Molecule: Major Coat Protein
Chain: A
Mutation: Yes
 Organism_scientific: Enterobacteria Phage Fd
Organism_taxid: 10864
Strain: Fd
methodSolid-State NMR
related structures by homologous chain: 1FDM, 1MZT
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the coat protein in fd filamentous bacteriophage particles determined by solid-state NMR spectroscopy., Zeri AC, Mesleh MF, Nevzorov AA, Opella SJ, Proc Natl Acad Sci U S A 2003 May 27;100(11):6458-63. Epub 2003 May 15. PMID:12750469
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (224 Kb) [Save to disk]
  • Biological Unit Coordinates (1nh4.pdb1.gz) 11 Kb
  • CSU: Contacts of Structural Units for 1NH4
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1NH4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NH4 from S2C, [Save to disk]
    • View 1NH4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1NH4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1NH4, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1nh4a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nh4_A] [1nh4]
  • SWISS-PROT database: [Q9T0Q9]
  • Domain organization of [Q9T0Q9_BPFD] by SWISSPFAM
    • Other resources with information on 1NH4
  • Community annotation for 1NH4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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