1NKL Saposin Fold date Apr 17, 1997
title Nk-Lysin From Pig, Nmr, 20 Structures
authors G.Otting, E.Liepinsh
compound source
Molecule: Nk-Lysin
Chain: A
Other_details: Active By Membrane-Binding
 Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823
Organ: Intestine
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSaposin fold revealed by the NMR structure of NK-lysin., Liepinsh E, Andersson M, Ruysschaert JM, Otting G, Nat Struct Biol 1997 Oct;4(10):793-5. PMID:9334742
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (428 Kb) [Save to disk]
  • Biological Unit Coordinates (1nkl.pdb1.gz) 21 Kb
  • CSU: Contacts of Structural Units for 1NKL
  • Original NMR restraints for 1NKL from PDB
  • Retrieve 1NKL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NKL from S2C, [Save to disk]
    • View 1NKL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1NKL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1NKL, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1nkl__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nkl] [1nkl_A]
  • SWISS-PROT database: [Q29075]
  • Belongs to the amoebapore (amoebapore) family according to TCDB.
  • Domain organization of [NKL_PIG] by SWISSPFAM
  • Domain found in 1NKL: [SapB ] by SMART
    • Other resources with information on 1NKL
  • Community annotation for 1NKL at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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