1NLP Complex (Transferase Peptide) date Aug 04, 1996
title Structure Of Signal Transduction Protein, Nmr, Minimized Ave Structure
authors S.Feng, T.M.Kapoor, F.Shirai, A.P.Combs, S.L.Schreiber
compound source
Molecule: C-Src
Chain: C
Fragment: Sh3 Domain
Ec: 2.7.1.112
Engineered: Yes
 Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Gene: Chicken
Expression_system: Gst-Fusion
Expression_system_plasmid: Pgex-2t
Expression_system_gene: Chicken

Molecule: Nl2 (Mn8-Mn1-Plpplp)
Chain: N
Engineered: Yes
Other_details: Ligand Nl2 Contains Non-Peptide Elements
methodSolution NMR
ligand ACE, MN1, MN8, NH2 enzyme Transferase E.C.2.7.1.112 BRENDA
Primary referenceMolecular basis for the binding of SH3 ligands with non-peptide elements identified by combinatorial synthesis., Feng S, Kapoor TM, Shirai F, Combs AP, Schreiber SL, Chem Biol 1996 Aug;3(8):661-70. PMID:8807900
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk]
  • Biological Unit Coordinates (1nlp.pdb1.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 1NLP
  • CSU: Contacts of Structural Units for 1NLP
  • Retrieve 1NLP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NLP from S2C, [Save to disk]
    • View 1NLP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1NLP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1NLP, from MSDmotif at EBI
  • Genome occurence of 1NLP's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1nlpc_, region C [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nlp_N] [1nlp_C] [1nlp]
  • SWISS-PROT database: [P00523]
  • Domain organization of [SRC_CHICK] by SWISSPFAM
  • Domain found in 1NLP: [SH3 ] by SMART
    • Other resources with information on 1NLP
  • Community annotation for 1NLP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science