1NM0 Oxidoreductase date Jan 08, 2003
title Proteus Mirabilis Catalase In Complex With Formiate
authors P.Andreoletti, A.Pernoud, P.Gouet, H.M.Jouve
compound source
Molecule: Catalase
Chain: A
Ec: 1.11.1.6
 Organism_scientific: Proteus Mirabilis
Organism_taxid: 584
symmetry Space Group: P 62 2 2
R_factor 0.181 R_Free 0.211
crystal
cell
length a length b length c angle alpha angle beta angle gamma
110.000 110.000 250.000 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand FMT, GOL, HEM, OMT, SO4 enzyme Oxidoreductase E.C.1.11.1.6 BRENDA
related structures by homologous chain: 1H6N, 1H7K
Gene
Ontology
ChainFunctionProcessComponent
A
  • catalase activity
  • peroxidase activity


    • Primary referenceStructural studies of Proteus mirabilis catalase in its ground state, oxidized state and in complex with formic acid., Andreoletti P, Pernoud A, Sainz G, Gouet P, Jouve HM, Acta Crystallogr D Biol Crystallogr 2003 Dec;59(Pt 12):2163-8. PMID:14646074
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (1nm0.pdb1.gz) 87 Kb
  • Biological Unit Coordinates (1nm0.pdb2.gz) 345 Kb
  • LPC: Ligand-Protein Contacts for 1NM0
  • CSU: Contacts of Structural Units for 1NM0
  • Likely Quarternary Molecular Structure file(s) for 1NM0
  • Structure Factors (375 Kb)
  • Retrieve 1NM0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NM0 from S2C, [Save to disk]
  • Re-refined 1nm0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1NM0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1NM0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1NM0, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1nm0a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nm0] [1nm0_A]
  • SWISS-PROT database: [P42321]
  • Domain organization of [CATA_PROMI] by SWISSPFAM
  • Domain found in 1NM0: [Catalase ] by SMART
    • Other resources with information on 1NM0
  • Community annotation for 1NM0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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