1NML Oxidoreductase date Jan 10, 2003
title Di-Haemic Cytochrome C Peroxidase From Pseudomonas Nautica 6 In (Ph 4.0)
authors J.M.Dias, C.Bonifacio, T.Alves, A.S.Pereira, D.Bourgeois, I.Moura M.J.Romao
compound source
Molecule: Di-Haem Cytochrome C Peroxidase
Chain: A
Ec: 1.11.1.5
 Organism_scientific: Marinobacter Hydrocarbonoclasticus
Organism_taxid: 2743
Strain: 617
Other_details: Synonym Marinobacter Hydrocarbonoclasticus
symmetry Space Group: P 31 2 1
R_factor 0.179 R_Free 0.199
crystal
cell
length a length b length c angle alpha angle beta angle gamma
114.457 114.457 90.658 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand CIT, HEC enzyme Oxidoreductase E.C.1.11.1.5 BRENDA
note 1NML is a representative structure
related structures by homologous chain: 1EB7, 1RZ6
Gene
Ontology
ChainFunctionProcessComponent
A
  • electron transfer activity


    • Primary referenceStructural basis for the mechanism of Ca(2+) activation of the di-heme cytochrome c peroxidase from Pseudomonas nautica 617., Dias JM, Alves T, Bonifacio C, Pereira AS, Trincao J, Bourgeois D, Moura I, Romao MJ, Structure (Camb) 2004 Jun;12(6):961-73. PMID:15274917
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (1nml.pdb1.gz) 58 Kb
  • Biological Unit Coordinates (1nml.pdb2.gz) 114 Kb
  • LPC: Ligand-Protein Contacts for 1NML
  • CSU: Contacts of Structural Units for 1NML
  • Likely Quarternary Molecular Structure file(s) for 1NML
  • Structure Factors (280 Kb)
  • Retrieve 1NML in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NML from S2C, [Save to disk]
  • Re-refined 1nml structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1NML in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1NML
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1NML, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1nmla1, region A:1-166 [Jmol] [rasmolscript] [script source]
        - Domain d1nmla2, region A:167-326 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nml_A] [1nml]
  • SWISS-PROT database: [P83787]
  • Domain organization of [P83787_MARHY] by SWISSPFAM
    • Other resources with information on 1NML
  • Community annotation for 1NML at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science