1NNQ Structural Genomics, Unknown Function date Jan 14, 2003
title Rubrerythrin From Pyrococcus Furiosus Pfu-1210814
authors Z.J.Liu, W.Tempel, F.D.Schubot, A.Shah, W.B.Arendall Iii, J.P.Ro D.C.Richardson, J.S.Richardson, B.C.Wang, Southeast Collabora Structural Genomics (Secsg)
compound source
Molecule: Rubrerythrin
Chain: A, B
Engineered: Yes
 Organism_scientific: Pyrococcus Furiosus
Organism_taxid: 2261
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 42 21 2
R_factor 0.211 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
105.918 105.918 81.001 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.35 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural genomics of Pyrococcus furiosus: X-ray crystallography reveals 3D domain swapping in rubrerythrin., Tempel W, Liu ZJ, Schubot FD, Shah A, Weinberg MV, Jenney FE Jr, Arendall WB 3rd, Adams MW, Richardson JS, Richardson DC, Rose JP, Wang BC, Proteins 2004 Dec 1;57(4):878-82. PMID:15468318
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (1nnq.pdb1.gz) 53 Kb
  • Biological Unit Coordinates (1nnq.pdb2.gz) 104 Kb
  • LPC: Ligand-Protein Contacts for 1NNQ
  • CSU: Contacts of Structural Units for 1NNQ
  • Likely Quarternary Molecular Structure file(s) for 1NNQ
  • Structure Factors (275 Kb)
  • Retrieve 1NNQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NNQ from S2C, [Save to disk]
  • Re-refined 1nnq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1NNQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1NNQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1NNQ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1nnqa2, region A:135-171 [Jmol] [rasmolscript] [script source]
        - Domain d1nnqa1, region A:2-134 [Jmol] [rasmolscript] [script source]
        - Domain d1nnqb2, region B:135-171 [Jmol] [rasmolscript] [script source]
        - Domain d1nnqb1, region B:2-134 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nnq] [1nnq_B] [1nnq_A]
  • SWISS-PROT database: [Q9UWP7]
  • Domain organization of [Q9UWP7_PYRFU] by SWISSPFAM
    • Other resources with information on 1NNQ
  • Community annotation for 1NNQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science